see L.J. Farrugia et al (2000) Acta Cryst C56 e435-436
Obtaining accurate charge densities in compounds with elements heavier
than Z = 35 (Br) is one of the current challenges in this area. It is
usually considered necessary to utilise short wavelength synchrotron
X-radiation to minimise the effects of absorption and extinction.
The lanthanide complexes of 2,2'-oxydiacetate
Na5[M(C4H4O5)3]
(BF4)2.6H2O (M=Nd, Sm, Eu, Gd)
are isomorphous and isostructural, and contain 9-coordinate lanthanide ions (Fig 1).
The racemic complexes spontaneously resolve on crystallisation in the trigonal space group
R32 into the lambda and delta isomers, and their excellent large and
well formed crystals have been shown to exhibit
X-ray CD spectra (Peacock, Stewart et al).
Due to the unusually high crystallinity of these materials, we have obtained
excellent quality data sets for the Gd and Eu complexes from a laboratory
diffractometer (Nonius KappaCCD, 100K). In a recent article
(J. Phys. Chem. Solids (2004) 65 1927-1933),
Lecomte et al reported serious difficulties in modelling the
charge density for a gadolinium complex, which was attributed to
inadequate scattering factors for Gd. In contrast, we find no such difficulty
using the new XD scattering factors obtained from STO atomic relativistic
wavefunctions obtained at PBE/QZ4P level of theory
(Volkov A.; Macchi, P. unpublished work).
A multipole refinement using XD2006 converged to R(F) = 0.65% with
GOF = 1.26, for 5264 data with sin(theta)/lambda <= 1.08. All data have
I > 3sig(I). The residuals in a Fourier map (max sin(theta)/lambda = 1)
range from -0.31 to +0.26 eA-3, which is quite acceptable
for such a heavy atom as Gd (Z=64). It was found necessary to adopt
anharmonic thermal motion for the Gd and Na atoms to model the sharp
residual features around these atoms. In order to cope with the substantially
differing radial properties of the 6s/5d and 4f valence electrons, the Gd
atom was modelled by two coincident pseudoatoms - the corresponding entry
in the SCAT table is shown below.
Figure 1. The structure of the anionic complex
[Gd(C4H4O5)3]3-.
Figure 2. Scatterplot of scale factors for individual reflections.
Figure 3 Difference Fourier map in the Gd(1)-O(1)-O(2) plane. Contours are drawn at intervals of +/- 0.05 eA-3. Blue contours correspond to positive residuals, red ones to negative. |